Lycopersicon Plant Transcription Factor analysis platform

News

Wu Y et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25, 186(11): 2313-2328.e15. Epub 2023 May 4.

Li N et al. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May, 55(5): 852-860. Epub 2023 Apr 6.

Schmidt MH et al. De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. Plant Cell. 2017 Oct, 29(10):2336-2348

Wang X et al. Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nat Commun. 11, 5817 (2020).

Yu X et al. Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and S. galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis. Hortic Res. 2022 Jun 20, uhac139 eCollection 2022.

About This Website

(Lycopersicon Plant Transcription Factor analysis platform, LTPFT) is achieved by collecting and organizing the whole genome of sequenced species in the tomato genus, as well as transcription factor data related to tomato fruit ripening. Bioinformatics analysis methods are used to process and collect hidden Markov models for chromosome localization, multiple sequence alignment, tree construction, and obtaining collinearity lists supported by genes. Using computer languages such as HTML, CSS, JavaScript, PHP, MySQL, etc., the above results are displayed on an online platform, providing services such as downloading, searching, and analyzing information on various species for relevant researchers. At the same time, the platform comes with various commonly used tools such as sequence alignment, genome visualization, and evolutionary tree visualization, which can help researchers analyze and visualize various types of data.

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